The latest update has fixed the issue for me. (Custom queue completion scripts causing invisible queue issue).
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Also having the same issue. My SAB version is: 3.0, running this via a DynDNS address, through NGinX to my local NASes (Two installs of SAB). Also have a custom base URL (via NGinX) for each instance, as they both run on the same ports, but on different devices, so can't pass both through the router...